Bibliografic database on Semiconductors, Heterostructures and Biophysics

2000 - 2009 years

• Studies of Phononlike Low-Energy Excitations of Protein Molecules by Inelastic X-Ray Scattering
  Dazhi Liu, Xiang-qiang Chu, Marco Lagi, Yang Zhang, Emiliano Fratini, Piero Baglioni, Ahmet Alatas, Ayman Said, Ercan Alp, and Sow-Hsin Chen
  Phys. Rev. Lett. 101, 135501 (2008)
• How rigid are viruses
  R. D. Hartschuh, S. P. Wargacki, H. Xiong, J. Neiswinger, A. Kisliuk, S. Sihn, V. Ward, R. A. Vaia, and A. P. Sokolov
  Phys. Rev. E 78, 021907 (2008)
• Lattice Dynamics of a Protein Crystal
  Lars Meinhold, Franci Merzel, and Jeremy C. Smith
  Phys. Rev. Lett. 99, 138101 (2007)
• Atomistic model of DNA : Phonons and base-pair opening
  F. Merzel, F. Fontaine-Vive, M. R. Johnson, and G. J. Kearley
  Phys. Rev. E 76, 031917 (2007)
• Soft modes near the buckling transition of icosahedral shells
  M. Widom, J. Lidmar, and David R. Nelson
  Phys. Rev. E 76, 031911 (2007)
• Phonon dispersion of oriented DNA by inelastic x-ray scattering
  M. Krisch, A. Mermet, H. Grimm, V. T. Forsyth, and A. Rupprecht
  Phys. Rev. E 73, 061909 (2006)
• Acoustic phonon quantization and low-frequency Raman spectra of spherical viruses
  Mina Talati and Prafulla K. Jha
  Phys. Rev. E 73, 011901 (2006)
• Electronic properties of guanine traps in DNA
  Vadim Apalkov and Tapash Chakraborty
  Phys. Rev. B 73, 113103 (2006)
• Picosecond Thermometer in the Amide I Band of Myoglobin
  R. H. Austin, A. Xie, L. van der Meer, B. Redlich, P.-A. Lindgård, H. Frauenfelder, and D. Fu
  Phys. Rev. Lett. 94, 128101 (2005)
• Phonon-Assisted Excitonic Recombination Channels Observed in DNA-Wrapped Carbon Nanotubes Using Photoluminescence Spectroscopy
  S. G. Chou, F. Plentz, J. Jiang, R. Saito, D. Nezich, H. B. Ribeiro, A. Jorio, M. A. Pimenta, Ge. G. Samsonidze, A. P. Santos, M. Zheng, G. B. Onoa, E. D. Semke, G. Dresselhaus, and M. S. Dresselhaus
  Phys. Rev. Lett. 94, 127402 (2005)
• Electron-molecular-vibration coupling for small polarons in DNAs
  Masateru Taniguchi and Tomoji Kawai
  Phys. Rev. E 72, 061909 (2005)
• Analytical tools for solitons and periodic waves corresponding to phonons on Lennard-Jones lattices in helical proteins
  F. d’Ovidio, H. G. Bohr, and P.-A. Lindgård
  Phys. Rev. E 71, 026606 (2005)
• Phonon -assisted exciton relaxation dynamics for a (6,5)-enriched DNA -wrapped single-walled carbon nanotube sample
  S. G. Chou, M. F. DeCamp, J. Jiang, Ge. G. Samsonidze, E. B. Barros, F. Plentz, A. Jorio, M. Zheng, G. B. Onoa, E. D. Semke, A. Tokmakoff, R. Saito, G. Dresselhaus, and M. S. Dresselhaus
  Phys. Rev. B 72, 195415 (2005)
• Transverse tunneling current through guanine traps in DNA
  Vadim Apalkov and Tapash Chakraborty
  Phys. Rev. B 72, 161102 (2005)
• Contact-dependent effects and tunneling currents in DNA molecules
  E. Maciá, F. Triozon, and S. Roche
  Phys. Rev. B 71, 113106 (2005)
• Colloquium: The quest for high-conductance DNA
  R. G. Endres, D. L. Cox, and R. R. P. Singh
  Rev. Mod. Phys. 76, 195 (2004)
• Nonlinear Structures and Thermodynamic Instabilities in a One-Dimensional Lattice System
  N. Theodorakopoulos, M. Peyrard, and R. S. MacKay
  Phys. Rev. Lett. 93, 258101 (2004)
• Solitons in alpha -helical proteins
  L. Brizhik, A. Eremko, B. Piette, and W. Zakrzewski
  Phys. Rev. E 70, 031914 (2004)
• Electronic structures of A - and B -type DNA crystals
  M. Taniguchi and T. Kawai
  Phys. Rev. E 70, 011913 (2004)
• Breather statics and dynamics in Klein-Gordon chains with a bend
  J. Cuevas and P. G. Kevrekidis
  Phys. Rev. E 69, 056609 (2004)
• Relaxation channels of two-vibron bound states in alpha -helix proteins
  V. Pouthier and C. Falvo
  Phys. Rev. E 69, 041906 (2004)
• Spectral response of crystalline acetanilide and N -methylacetamide: Vibrational self-trapping in hydrogen-bonded crystals
  J. Edler and P. Hamm
  Phys. Rev. B 69, 214301 (2004)
• Embedding method for conductance of DNA
  O. R. Davies and J. E. Inglesfield
  Phys. Rev. B 69, 195110 (2004)
• Small Polarons in Dry DNA
  S. S. Alexandre, E. Artacho, J. M. Soler, and H. Chacham
  Phys. Rev. Lett. 91, 108105 (2003)
• Thermal denaturation of a helicoidal DNA model
  M. Barbi, S. Lepri, M. Peyrard, and N. Theodorakopoulos
  Phys. Rev. E 68, 061909 (2003)
• Network rigidity at finite temperature: Relationships between thermodynamic stability, the nonadditivity of entropy, and cooperativity in molecular systems
  D. J. Jacobs, S. Dallakyan, G. G. Wood, and A. Heckathorne
  Phys. Rev. E 68, 061109 (2003)
• Two-vibron bound states in alpha -helix proteins: The interplay between the intramolecular anharmonicity and the strong vibron
  V. Pouthier
  Phys. Rev. E 68, 021909 (2003)
• Polaron normal modes in the Peyrard-Bishop-Holstein model
  P. Maniadis, G. Kalosakas, K. Ø. Rasmussen, and A. R. Bishop
  Phys. Rev. B 68, 174304 (2003)
• Mediation of Long Range Charge Transfer by Kondo Bound States
  R. G. Endres, D. L. Cox, R. R. P. Singh, and S. K. Pati
  Phys. Rev. Lett. 88, 166601 (2002)
• Large-bandgap behavior in transport of electrons through individual DNA molecules caused by coupling with a two-level system
  J.-f. Feng and S.-J. Xiong
  Phys. Rev. E 66, 021908 (2002)
• Breathers in a system with helicity and dipole interaction
  B. Sánchez-Rey, J. F. R. Archilla, F. Palmero, and F. R. Romero
  Phys. Rev. E 66, 017601 (2002)
• Nonlinear dynamics of topological solitons in DNA
  L. V. Yakushevich, A. V. Savin, and L. I. Manevitch
  Phys. Rev. E 66, 016614 (2002)
• Effects of intrinsic base-pair fluctuations on charge transport in DNA
  S. Komineas, G. Kalosakas, and A. R. Bishop
  Phys. Rev. E 65, 061905 (2002)
• Self-trapping versus trapping: Application to hole transport in DNA
  D. M. Basko and E. M. Conwell
  Phys. Rev. E 65, 061902 (2002)
• Quantum computation in brain microtubules: Decoherence and biological feasibility
  S. Hagan, S. R. Hameroff, and J. A. Tuszynski
  Phys. Rev. E 65, 061901 (2002)
• Vibrational dynamics of myoglobin determined by the phonon-assisted Mössbauer effect
  K. Achterhold, C. Keppler, A. Ostermann, U. van Bürck, W. Sturhahn, E. E. Alp, and F. G. Parak
  Phys. Rev. E 65, 051916 (2002)
• Submillimeter-wave phonon modes in DNA macromolecules
  D. L. Woolard, T. R. Globus, B. L. Gelmont, M. Bykhovskaia, A. C. Samuels, D. Cookmeyer, J. L. Hesler, T. W. Crowe, J. O. Jensen, J. L. Jensen, and W. R. Loerop
  Phys. Rev. E 65, 051903 (2002)
• Impact of regulatory proteins on the nonlinear dynamics of DNA
  M. V. Sataric and J. A. Tuszynski
  Phys. Rev. E 65, 051901 (2002)
• Excitons in a photosynthetic light-harvesting system: A combined molecular dynamics, quantum chemistry, and polaron model study
  A. Damjanovic, I. Kosztin, U. Kleinekathöfer, and K. Schulten
  Phys. Rev. E 65, 031919 (2002)
• Interplay of nonlinearity and geometry in a DNA-related, Klein-Gordon model with long-range dipole-dipole interaction
  J. F. R. Archilla, P. L. Christiansen, and Yu. B. Gaididei
  Phys. Rev. E 65, 016609 (2002)
• Polarons with a twist
  W. Zhang, A. O. Govorov, and S. E. Ulloa
  Phys. Rev. B 66, 060303 (2002)
• Group-fitted ab initiosingle- and multiple-scattering EXAFS Debye-Waller factors
  N. Dimakis and G. Bunker
  Phys. Rev. B 65, 201103 (2002)
• Quantum computing with quantum dots on quantum linear supports
  K. R. Brown, D. A. Lidar, and K. B. Whaley
  Phys. Rev. A 65, 012307 (2002)
• Band Resonant Tunneling in DNA Molecules
  M. Hjort and S. Stafström
  Phys. Rev. Lett. 87, 228101 (2001)
• Long-Range Reactive Dynamics in Myoglobin
  J. T. Sage, S. M. Durbin, W. Sturhahn, D. C. Wharton, P. M. Champion, P. Hession, J. Sutter, and E. E. Alp
  Phys. Rev. Lett. 86, 4966 (2001)
• Effect of defects on thermal denaturation of DNA oligomers
  N. Singh and Y. Singh
  Phys. Rev. E 64, 042901 (2001)
• Glass transition in protein hydration water
  M. Peyrard
  Phys. Rev. E 64, 011109 (2001)
• Polymer fragmentation in extensional flow
  A. M. Maroja, F. A. Oliveira, M. Ciesla, and L. Longa
  Phys. Rev. E 63, 061801 (2001)
• Phase transition of a quasi-one-dimensional system
  S.-L. Nyeo and I.-C. Yang
  Phys. Rev. E 63, 046109 (2001)
• Bubble propagation in a helicoidal molecular chain
  A. Campa
  Phys. Rev. E 63, 021901 (2001)
• Fluctuation-Facilitated Charge Migration along DNA
  R. Bruinsma, G. Grüner, M. R. D'Orsogna, and J. Rudnick
  Phys. Rev. Lett. 85, 4393 (2000)
• Charge Transport along the lambda -DNA Double Helix
  P. Tran, B. Alavi, and G. Gruner
  Phys. Rev. Lett. 85, 1564 (2000)
• Improvement of the Davydov theory of bioenergy transport in protein molecular systems
  P. Xiao-feng
  Phys. Rev. E 62, 6989 (2000)
• Glasslike dynamical behavior of the plastocyanin hydration water
  A. R. Bizzarri, A. Paciaroni, and S. Cannistraro
  Phys. Rev. E 62, 3991 (2000)
• Perturbative study of classical Ablowitz-Ladik type soliton dynamics in relation to energy transport in alpha -helical proteins
  K. Kundu
  Phys. Rev. E 61, 5839 (2000)