Bacteria
- Self-Organized Periodicity of Protein Clusters in Growing Bacteria
Hui Wang, Ned S. Wingreen, and Ranjan Mukhopadhyay
Phys. Rev. Lett. 101, 218101 (2008)
- Origin of Contractile Force during Cell Division of Bacteria
Biplab Ghosh and Anirban Sain
Phys. Rev. Lett. 101, 178101 (2008)
- Unexpected Bipolar Flagellar Arrangements and Long-Range Flows Driven by Bacteria near Solid Boundaries
Luis H. Cisneros, John O. Kessler, Ricardo Ortiz, Ricardo Cortez, and Martin A. Bees
Phys. Rev. Lett. 101, 168102 (2008)
- Exact Solution of a Model DNA-Inversion Genetic Switch with Orientational Control
Paolo Visco, Rosalind J. Allen, and Martin R. Evans
Phys. Rev. Lett. 101, 118104 (2008)
- Nonequilibrium Phase Transition in the Sedimentation of Reproducing Particles
C. Barrett-Freeman, M. R. Evans, D. Marenduzzo, and W. C. Poon
Phys. Rev. Lett. 101, 100602 (2008)
- Hydrodynamic Attraction of Swimming Microorganisms by Surfaces
Allison P. Berke, Linda Turner, Howard C. Berg, and Eric Lauga
Phys. Rev. Lett. 101, 038102 (2008)
- Rectification of Swimming Bacteria and Self-Driven Particle Systems by Arrays of Asymmetric Barriers
M. B. Wan, C. J. Olson Reichhardt, Z. Nussinov, and C. Reichhardt
Phys. Rev. Lett. 101, 018102 (2008)
- Statistical Mechanics of Interacting Run-and-Tumble Bacteria
J. Tailleur and M. E. Cates
Phys. Rev. Lett. 100, 218103 (2008)
- Nonlinear Study of Symmetry Breaking in Actin Gels: Implications for Cellular Motility
Karin John, Philippe Peyla, Klaus Kassner, Jacques Prost, and Chaouqi Misbah
Phys. Rev. Lett. 100, 068101 (2008)
- Hopping Conduction and Bacteria : Transport in Disordered Reaction-Diffusion Systems
Andrew R. Missel and Karin A. Dahmen
Phys. Rev. Lett. 100, 058301 (2008)
- Beating patterns of filaments in viscoelastic fluids
Henry C. Fu, Charles W. Wolgemuth, and Thomas R. Powers
Phys. Rev. E 78, 041913 (2008)
- Elasticity-mediated nematiclike bacterial organization in model extracellular DNA matrix
Ivan I. Smalyukh, John Butler, Joshua D. Shrout, Matthew R. Parsek, and Gerard C. Wong
Phys. Rev. E 78, 030701 (2008)
- Optimal optical trap for bacterial viability
Utkur Mirsaidov, Winston Timp, Kaethe Timp, Mustafa Mir, Paul Matsudaira, and Gregory Timp
Phys. Rev. E 78, 021910 (2008)
- Dynamics of a Brownian circle swimmer
Sven van Teeffelen and Hartmut Löwen
Phys. Rev. E 78, 020101 (2008)
- Crystallization and melting of bacteria colonies and Brownian bugs
Francisco Ramos, Cristóbal López, Emilio Hernández-García, and Miguel A. Muñoz
Phys. Rev. E 77, 021102 (2008)
- Hydrodynamics of self-propelled hard rods
Aparna Baskaran and M. Cristina Marchetti
Phys. Rev. E 77, 011920 (2008)
- Fluctuations and Rheology in Active Bacterial Suspensions
D. T. Chen, A. W. Lau, L. A. Hough, M. F. Islam, M. Goulian, T. C. Lubensky, and A. G. Yodh
Phys. Rev. Lett. 99, 148302 (2007)
- Model for Self-Propulsive Helical Filaments: Kink-Pair Propagation
Hirofumi Wada and Roland R. Netz
Phys. Rev. Lett. 99, 108102 (2007)
- Hydrodynamic Surface Interactions Enable Escherichia Coli to Seek Efficient Routes to Swim Upstream
Jane Hill, Ozge Kalkanci, Jonathan L. McMurry, and Hur Koser
Phys. Rev. Lett. 98, 068101 (2007)
- Correlated phenotypic transitions to competence in bacterial colonies
Inbal Hecht, Eshel Ben-Jacob, and Herbert Levine
Phys. Rev. E 76, 040901 (2007)
- Time scale of entropic segregation of flexible polymers in confinement: Implications for chromosome segregation in filamentous bacteria
Axel Arnold and Suckjoon Jun
Phys. Rev. E 76, 031901 (2007)
- Dynamic and static light scattering analysis of DNA ejection from the phage λ
David Löf, Karin Schillén, Bengt Jönsson, and Alex Evilevitch
Phys. Rev. E 76, 011914 (2007)
- Insights into thermophilic archaebacterial membrane stability from simplified models of lipid membranes
Charles H. Davis, Huifen Nie, and Nikolay V. Dokholyan
Phys. Rev. E 75, 051921 (2007)
- Model for dynamical coherence in thin films of self-propelled microorganisms
Igor S. Aranson, Andrey Sokolov, John O. Kessler, and Raymond E. Goldstein
Phys. Rev. E 75, 040901 (2007)
- Magnetic irreversibility and the Verwey transition in nanocrystalline bacterial magnetite
Ruslan Prozorov, Tanya Prozorov, Surya K. Mallapragada, Balaji Narasimhan, Timothy J. Williams, and Dennis A. Bazylinski
Phys. Rev. B 76, 054406 (2007)
- Bistable Bacterial Growth Rate in Response to Antibiotics with Low Membrane Permeability
Johan Elf, Karin Nilsson, Tanel Tenson, and MÃ¥ns Ehrenberg
Phys. Rev. Lett. 97, 258104 (2006)
- Solitary Modes of Bacterial Culture in a Temperature Gradient
H. Salman, A. Zilman, C. Loverdo, M. Jeffroy, and A. Libchaber
Phys. Rev. Lett. 97, 118101 (2006)
- Physical Nature of Bacterial Cytoplasm
Ido Golding and Edward C. Cox
Phys. Rev. Lett. 96, 098102 (2006)
- Hidden Stochastic Nature of a Single Bacterial Motor
Ekaterina A. Korobkova, Thierry Emonet, Heungwon Park, and Philippe Cluzel
Phys. Rev. Lett. 96, 058105 (2006)
- FbsA-Driven Fibrinogen Polymerization: A Bacterial âDeceiving Strategyâ
Matteo Pierno, Laura Maravigna, Roberto Piazza, Livia Visai, and Pietro Speziale
Phys. Rev. Lett. 96, 028108 (2006)
- Generic Phase Diagram of Active Polar Films
R. Voituriez, J. F. Joanny, and J. Prost
Phys. Rev. Lett. 96, 028102 (2006)
- Dynamic buckling of morphoelastic filaments
Raymond E. Goldstein and Alain Goriely
Phys. Rev. E 74, 010901 (2006)
- Reversal of bacterial locomotion at an obstacle
Luis Cisneros, Christopher Dombrowski, Raymond E. Goldstein, and John O. Kessler
Phys. Rev. E 73, 030901 (2006)
- Analytic approach to the evolutionary effects of genetic exchange
Elisheva Cohen, David A. Kessler, and Herbert Levine
Phys. Rev. E 73, 016113 (2006)
- Elasticity theory for self-assembled protein lattices with application to the martensitic phase transition in bacteriophage T4 tail sheath
Wayne Falk and Richard D. James
Phys. Rev. E 73, 011917 (2006)
- Model for polymorphic transitions in bacterial flagella
Srikanth V. Srigiriraju and Thomas R. Powers
Phys. Rev. E 73, 011902 (2006)
- Persistence Length Changes Dramatically as RNA Folds
G. Caliskan, C. Hyeon, U. Perez-Salas, R. M. Briber, S. A. Woodson, and D. Thirumalai
Phys. Rev. Lett. 95, 268303 (2005)
- Low-Force DNA Condensation and Discontinuous High-Force Decondensation Reveal a Loop-Stabilizing Function of the Protein Fis
Dunja Skoko, Jie Yan, Reid C. Johnson, and John F. Marko
Phys. Rev. Lett. 95, 208101 (2005)
- Symmetry-Breaking Motility
Allen Lee, Ha Youn Lee, and Mehran Kardar
Phys. Rev. Lett. 95, 138101 (2005)
- Continuum Model for Polymorphism of Bacterial Flagella
Srikanth V. Srigiriraju and Thomas R. Powers
Phys. Rev. Lett. 94, 248101 (2005)
- How White Noise Generates Power-Law Switching in Bacterial Flagellar Motors
Yuhai Tu and G. Grinstein
Phys. Rev. Lett. 94, 208101 (2005)
- Recombination Dramatically Speeds Up Evolution of Finite Populations
Elisheva Cohen, David A. Kessler, and Herbert Levine
Phys. Rev. Lett. 94, 098102 (2005)
- Mechanical resonances of bacteria cells
P. V. Zinin, J. S. Allen, and V. M. Levin
Phys. Rev. E 72, 061907 (2005)
- Lubricating bacteria model for the growth of bacterial colonies exposed to ultraviolet radiation
Shengli Zhang, Lei Zhang, Run Liang, Erhu Zhang, Yachao Liu, and Shumin Zhao
Phys. Rev. E 72, 051913 (2005)
- Hierarchical structure analysis describing abnormal base composition of genomes
Zhengqing Ouyang, Jian-Kun Liu, and Zhen-Su She
Phys. Rev. E 72, 041915 (2005)
- Population dynamics in spatially heterogeneous systems with drift: The generalized contact process
Jaewook Joo and Joel L. Lebowitz
Phys. Rev. E 72, 036112 (2005)
- Self-gravitating Brownian systems and bacterial populations with two or more types of particles
Julien Sopik, ClÃ
Phys. Rev. E 72, 026105 (2005)
- Chemotactic collapse and mesenchymal morphogenesis
Carlos Escudero
Phys. Rev. E 72, 022903 (2005)
- Randomly curved runs interrupted by tumbling: A model for bacterial motion
C. A. Condat, J. JÃ
Phys. Rev. E 72, 021909 (2005)
- Phase transitions in multiplicative competitive processes
Hideaki Shimazaki and Ernst Niebur
Phys. Rev. E 72, 011912 (2005)
- Reaction-diffusion model for pattern formation in E. coli swarming colonies with slime
M.-P. Zorzano, D. Hochberg, M.-T. Cuevas, and J.-M. Gómez-Gómez
Phys. Rev. E 71, 031908 (2005)
- Ion conduction in the KcsA potassium channel analyzed with a minimal kinetic model
Salvador MafÃ
Phys. Rev. E 71, 022901 (2005)
- Deformation of a helical filament by flow and electric or magnetic fields
M. Kim and T. R. Powers
Phys. Rev. E 71, 021914 (2005)
- Theory of femtosecond coherent anti-Stokes Raman backscattering enhanced by quantum coherence for standoff detection of bacterial spores
C. H. Ooi, Guy Beadie, George W. Kattawar, John F. Reintjes, Yuri Rostovtsev, M. Suhail Zubairy, and Marlan O. Scully
Phys. Rev. A 72, 023807 (2005)
- Self-Concentration and Large-Scale Coherence in Bacterial Dynamics
C. Dombrowski, L. Cisneros, S. Chatkaew, R. E. Goldstein, and J. O. Kessler
Phys. Rev. Lett. 93, 098103 (2004)
- Sequence-related human proteins cluster by degree of evolutionary conservation
R. Mrowka, A. Patzak, H. Herzel, and D. Holste
Phys. Rev. E 70, 051908 (2004)
- Periodically varying externally imposed environmental effects on population dynamics
M. Ballard, V. M. Kenkre, and M. N. Kuperman
Phys. Rev. E 70, 031912 (2004)
- Topological generalizations of network motifs
N. Kashtan, S. Itzkovitz, R. Milo, and U. Alon
Phys. Rev. E 70, 031909 (2004)
- Hydrodynamic interactions between rotating helices
M. Kim and T. R. Powers
Phys. Rev. E 69, 061910 (2004)
- Host-parasite coevolution and optimal mutation rates for semiconservative quasispecies
Yisroel Brumer and Eugene I. Shakhnovich
Phys. Rev. E 69, 061909 (2004)
- Low-lying excited states of light-harvesting system II in purple bacteria
Y. Zhao, M.-F. Ng, and G. Chen
Phys. Rev. E 69, 032902 (2004)
- Growth of Walled Cells: From Shells to Vesicles
A. Boudaoud
Phys. Rev. Lett. 91, 018104 (2003)
- Self-Organized Pattern Formation of a Bacteria Colony Modeled by a Reaction Diffusion System and Nucleation Theory
J. Y. Wakano, S. Maenosono, A. Komoto, N. Eiha, and Y. Yamaguchi
Phys. Rev. Lett. 90, 258102 (2003)
- Pattern Formation inside Bacteria: Fluctuations due to the Low Copy Number of Proteins
M. Howard and A. D. Rutenberg
Phys. Rev. Lett. 90, 128102 (2003)
- Hierarchical population model with a carrying capacity distribution for bacterial biofilms
J. O. Indekeu and K. Sznajd-Weron
Phys. Rev. E 68, 061904 (2003)
- Generalized thermodynamics and Fokker-Planck equations: Applications to stellar dynamics and two-dimensional turbulence
P.-H. Chavanis
Phys. Rev. E 68, 036108 (2003)
- Interplay of chemotaxis and chemokinesis mechanisms in bacterial dynamics
M. R. D
Phys. Rev. E 68, 021925 (2003)
- Multifractal and correlation analyses of protein sequences from complete genomes
Z.-G. Yu, V. Anh, and K.-S. Lau
Phys. Rev. E 68, 021913 (2003)
- Applicability of the Fisher equation to bacterial population dynamics
V. M. Kenkre and M. N. Kuperman
Phys. Rev. E 67, 051921 (2003)
- Hydrodynamics of bacterial colonies: A model
J. Lega and T. Passot
Phys. Rev. E 67, 031906 (2003)
- Evolution equation of population genetics: Relation to the density-matrix theory of quasiparticles with general dispersion laws
V. Bezák
Phys. Rev. E 67, 021913 (2003)
- Hydrodynamic Fluctuations and Instabilities in Ordered Suspensions of Self-Propelled Particles
R. Aditi Simha and S. Ramaswamy
Phys. Rev. Lett. 89, 058101 (2002)
- Effect of alpha -stable sorptive waiting times on microbial transport in microflow cells
F. A. Bonilla and J. H. Cushman
Phys. Rev. E 66, 031915 (2002)
- Simplifying the mosaic description of DNA sequences
R. K. Azad, J. Subba Rao, W. Li, and R. Ramaswamy
Phys. Rev. E 66, 031913 (2002)
- Segmentation of genomic DNA through entropic divergence: Power laws and scaling
Rajeev K. Azad, Pedro Bernaola-Galván, Ramakrishna Ramaswamy, and J. Subba Rao
Phys. Rev. E 65, 051909 (2002)
- Dynamic Compartmentalization of Bacteria: Accurate Division in E. Coli
M. Howard, A. D. Rutenberg, and S. de Vet
Phys. Rev. Lett. 87, 278102 (2001)
- Swarming Ring Patterns in Bacterial Colonies Exposed to Ultraviolet Radiation
A. M. Delprato, A. Samadani, A. Kudrolli, and L. S. Tsimring
Phys. Rev. Lett. 87, 158102 (2001)
- Collapsing bacterial cylinders
M. D. Betterton and M. P. Brenner
Phys. Rev. E 64, 061904 (2001)
- Measure representation and multifractal analysis of complete genomes
Zu-Guo Yu, Vo Anh, and Ka-Sing Lau
Phys. Rev. E 64, 031903 (2001)
- Measure representation and multifractal analysis of complete genomes
Z.-G. Yu, V. Anh, and K.-S. Lau
Phys. Rev. E 64, 031903 (2001)
- Active and passive particles: Modeling beads in a bacterial bath
G. Grégoire, H. Chaté, and Y. Tu
Phys. Rev. E 64, 011902 (2001)
- Phase transition in a spatial Lotka-Volterra model
G. Szabó and T. Czárán
Phys. Rev. E 63, 061904 (2001)
- Non-Hermitian delocalization from Hermitian Hamiltonians
N. Moiseyev and M. Glück
Phys. Rev. E 63, 041103 (2001)
- Theory of periodic swarming of bacteria: Application to Proteus mirabilis
A. Czirók, M. Matsushita, and T. Vicsek
Phys. Rev. E 63, 031915 (2001)
- Correlation property of length sequences based on global structure of the complete genome
Z.-G. Yu, V. V. Anh, and B. Wang
Phys. Rev. E 63, 011903 (2001)
- Twirling Elastica: Kinks, Viscous Drag, and Torsional Stress
Stephan A. Koehler and Thomas R. Powers
Phys. Rev. Lett. 85, 4827 (2000)
- Particle Diffusion in a Quasi-Two-Dimensional Bacterial Bath
X.-L. Wu and A. Libchaber
Phys. Rev. Lett. 84, 3017 (2000)
- Model for water transport into powdered xanthan combining gel swelling and vapor diffusion
U. Goerke, A. H. L. Chamberlain, E. A. Crilly, and P. J. McDonald
Phys. Rev. E 62, 5353 (2000)
- Nutrient chemotaxis suppression of a diffusive instability in bacterial colony dynamics
S. Arouh and H. Levine
Phys. Rev. E 62, 1444 (2000)
- Extinction transition in bacterial colonies under forced convection
T. Neicu, A. Pradhan, D. A. Larochelle, and A. Kudrolli
Phys. Rev. E 62, 1059 (2000)
- Bacterial turgor pressure can be measured by atomic force microscopy
M. Arnoldi, M. Fritz, E. Bäuerlein, M. Radmacher, E. Sackmann, and A. Boulbitch
Phys. Rev. E 62, 1034 (2000)
- Elastic Rod Model of a DNA Loop in the Lac Operon
Alexander Balaeff, L. Mahadevan, and Klaus Schulten
Phys. Rev. Lett. 83, 4900 (1999)
- Coupling of intramolecular and intermolecular linkage complexity of two DNAs
John F. Marko
Phys. Rev. E 59, 900 (1999)
- Modeling of spatiotemporal patterns in bacterial colonies
A. M. Lacasta, I. R. Cantalapiedra, C. E. Auguet, A. Peñaranda, and L. Ramírez-Piscina
Phys. Rev. E 59, 7036 (1999)
- Lubricating bacteria model for branching growth of bacterial colonies
Y. Kozlovsky, I. Cohen, I. Golding, and E. Ben-Jacob
Phys. Rev. E 59, 7025 (1999)
- Energy transfer between carotenoids and bacteriochlorophylls in light-harvesting complex II of purple bacteria
A. Damjanovic, T. Ritz, and K. Schulten
Phys. Rev. E 59, 3293 (1999)
- Topological Interactions in Multiply Linked DNA Rings
M. Otto and T. A. Vilgis
Phys. Rev. Lett. 80, 881 (1998)
- Supramolecular Liquid Crystallinity: Spherical Coils of Levan Surrounding Cylindrical Rods of DNA
Anne E. Huber and Christopher Viney
Phys. Rev. Lett. 80, 623 (1998)
- Self-assembled DNA
T. Salditt, I. Koltover, J. O. Rädler, and C. R. Safinya
Phys. Rev. E 58, 889 (1998)
- Kink instability in circular DNA studied as Helfrich chiral chains
Zhao Wei, Zhou Haijun, and Ou-Yang Zhong-can
Phys. Rev. E 58, 8040 (1998)
- Onset of bioconvection in suspensions of Bacillus subtilis
I. M. Jánosi, J. O. Kessler, and V. K. Horváth
Phys. Rev. E 58, 4793 (1998)
- Characterizing self-similarity in bacteria DNA sequences
Xin Lu, Zhirong Sun, Huimin Chen, and Yanda Li
Phys. Rev. E 58, 3578 (1998)
- Characterizing self-similarity in bacteria DNA sequences
X. Lu, Z. Sun, H. Chen, and Y. Li
Phys. Rev. E 58, 3578 (1998)
- Observation of super-Poisson statistics of bacterial (Photobacterium phosphoreum) bioluminescence during the early stage of cell proliferation
M. Kobayashi, B. Devaraj, and H. Inaba
Phys. Rev. E 57, 2129 (1998)
- RNA Virus Evolution via a Fitness-Space Model
Lev S. Tsimring, Herbert Levine, and David A. Kessler
Phys. Rev. Lett. 76, 4440 (1996)
- Formation of complex bacterial colonies via self-generated vortices
A. Czirók, E. Ben
Phys. Rev. E 54, 1791 (1996)
- Theoretical analysis of the helix-coil transition in positively superhelical DNA at high temperatures
Craig J. Benham
Phys. Rev. E 53, 2984 (1996)
- Response of bacterial colonies to imposed anisotropy
E. Ben
Phys. Rev. E 53, 1835 (1996)
- Cooperative Formation of Chiral Patterns during Growth of Bacterial Colonies
E. Ben-Jacob, I. Cohen, O. Shochet, A. Tenenbaum, A. Czirók, and T. Vicsek
Phys. Rev. Lett. 75, 2899 (1995)
- Aggregation Patterns in Stressed Bacteria
L. Tsimring, H. Levine, I. Aranson, E. Ben-Jacob, I. Cohen, O. Shochet, and W. N. Reynolds
Phys. Rev. Lett. 75, 1859 (1995)
- Statistical mechanics of supercoiled DNA
J. F. Marko and E. D. Siggia
Phys. Rev. E 52, 2912 (1995)
- Linguistic Features of Noncoding DNA Sequences
R. N. Mantegna, S. V. Buldyrev, A. L. Goldberger, S. Havlin, C. K. Peng, M. Simons, and H. E. Stanley
Phys. Rev. Lett. 73, 3169 (1994)
- Electron transfer mechanism in the reaction center of photosynthetic bacteria
H. Kuhn
Phys. Rev. A 34, 3409 (1986)
- Navier-Stokes symmetry in the phenomenological transport theory for bacterial chemotaxis
G. Rosen
Phys. Rev. A 29, 2774 (1984)
- Space-time rescaling symmetry in the tactic migration of micrometer-size organisms
G. Rosen
Phys. Rev. A 27, 1232 (1983)
- On the Volterra and Other Nonlinear Models of Interacting Populations
N. S. GOEL, S. C. MAITRA, and E. W. MONTROLL
Rev. Mod. Phys. 43, 231 (1971)