Biopolymers
- Cross-Linked Networks of Stiff Filaments Exhibit Negative Normal Stress
Enrico Conti and Fred C. MacKintosh
Phys. Rev. Lett. 102, 088102 (2009)
- Quantized biopolymer translocation through nanopores: Departure from simple scaling
Simone Melchionna, Massimo Bernaschi, Maria Fyta, Efthimios Kaxiras, and Sauro Succi
Phys. Rev. E 79, 030901 (2009)
- Nonlinear Elasticity of Composite Networks of Stiff Biopolymers with Flexible Linkers
C. P. Broedersz, C. Storm, and F. C. MacKintosh
Phys. Rev. Lett. 101, 118103 (2008)
- Insensitivity to Salt of Assembly of a Rigid Biopolymer Aggrecan
Ferenc Horkay, Peter J. Basser, Anne-Marie Hecht, and Erik Geissler
Phys. Rev. Lett. 101, 068301 (2008)
- Internal Dynamics of Superhelical DNA
Roman Shusterman, Tatyana Gavrinyov, and Oleg Krichevsky
Phys. Rev. Lett. 100, 098102 (2008)
- Monomer Depletion, Pressure Difference, and Membrane Tube Radius Reduction due to Fiber Polymerization in Microspikes
D. R. Daniels
Phys. Rev. Lett. 100, 048103 (2008)
- Translocation dynamics with attractive nanopore-polymer interactions
Kaifu Luo, Tapio Ala-Nissila, See-Chen Ying, and Aniket Bhattacharya
Phys. Rev. E 78, 061918 (2008)
- Strength limit of entropic elasticity in beta-sheet protein domains
Sinan Keten and Markus J. Buehler
Phys. Rev. E 78, 061913 (2008)
- Hydrodynamic correlations in the translocation of a biopolymer through a nanopore: Theory and multiscale simulations
Maria Fyta, Simone Melchionna, Sauro Succi, and Efthimios Kaxiras
Phys. Rev. E 78, 036704 (2008)
- Packing defects and the width of biopolymer bundles
Nir S. Gov
Phys. Rev. E 78, 011916 (2008)
- Micromechanical model for elasticity of the cell cytoskeleton
Sitikantha Roy and H. Jerry Qi
Phys. Rev. E 77, 061916 (2008)
- Sequence-dependent effects on the properties of semiflexible biopolymers
Zicong Zhou and Béla Joós
Phys. Rev. E 77, 061906 (2008)
- Free energy of twisted semiflexible polymers
Supurna Sinha
Phys. Rev. E 77, 061903 (2008)
- Entangled dynamics of a stiff polymer
Felix Höfling, Tobias Munk, Erwin Frey, and Thomas Franosch
Phys. Rev. E 77, 060904 (2008)
- Optically driven nonlinear microrheology of gelatin
James N. Wilking and Thomas G. Mason
Phys. Rev. E 77, 055101 (2008)
- Writhe distribution of stiff biopolymers
Abhijit Ghosh
Phys. Rev. E 77, 041804 (2008)
- Modifications in solvent clusters embedded along the fibers of a cellulose polymer network cause paper degradation
Marco De Spirito, Mauro Missori, Massimiliano Papi, Giuseppe Maulucci, Jose Teixeira, Carlo Castellano, and Giuseppe Arcovito
Phys. Rev. E 77, 041801 (2008)
- Universal features of water dynamics in solutions of hydrophilic polymers, biopolymers , and small glass-forming materials
Silvina Cerveny, Ángel Alegría, and Juan Colmenero
Phys. Rev. E 77, 031803 (2008)
- Observation of a dynamic crossover in RNA hydration water which triggers a dynamic transition in the biopolymer
Xiang-qiang Chu, Emiliano Fratini, Piero Baglioni, Antonio Faraone, and Sow-Hsin Chen
Phys. Rev. E 77, 011908 (2008)
- Accessibility and occlusion of biopolymers , ray tracing of radiating tubes, and the temperature of a tangle
Gregory Buck, Robert G. Scharein, Jeffrey Schnick, and Jonathan Simon
Phys. Rev. E 77, 011803 (2008)
- Statistical topology of closed curves: Some applications in polymer physics
E. Orlandini and S. G. Whittington
Rev. Mod. Phys. 79, 611 (2007)
- Scaling Equations for a Biopolymer in Salt Solution
Erik Geissler, Anne-Marie Hecht, and Ferenc Horkay
Phys. Rev. Lett. 99, 267801 (2007)
- Anisotropic Random Networks of Semiflexible Polymers
Panayotis Benetatos and Annette Zippelius
Phys. Rev. Lett. 99, 198301 (2007)
- Chirality and Equilibrium Biopolymer Bundles
Gregory M. Grason and Robijn F. Bruinsma
Phys. Rev. Lett. 99, 098101 (2007)
- Role of Conformational Entropy in Force-Induced Biopolymer Unfolding
Sanjay Kumar, Iwan Jensen, Jesper L. Jacobsen, and Anthony J. Guttmann
Phys. Rev. Lett. 98, 128101 (2007)
- Fluctuations of Permeable Interfaces in Water-in-Water Emulsions
Leonard M. Sagis
Phys. Rev. Lett. 98, 066105 (2007)
- Molecular Scale Imaging of F-Actin Assemblies Immobilized on a Photopolymer Surface
Taiji Ikawa, Fumihiko Hoshino, Osamu Watanabe, Youli Li, Philip Pincus, and Cyrus R. Safinya
Phys. Rev. Lett. 98, 018101 (2007)
- Elasticity of two-dimensional filaments with constant spontaneous curvature
Zicong Zhou
Phys. Rev. E 76, 061913 (2007)
- Buckling of stiff polymers: Influence of thermal fluctuations
Marc Emanuel, Hervé Mohrbach, Mehmet Sayar, Helmut Schiessel, and Igor M. Kulić
Phys. Rev. E 76, 061907 (2007)
- Elasticity of stiff biopolymers
Abhijit Ghosh, Joseph Samuel, and Supurna Sinha
Phys. Rev. E 76, 061801 (2007)
- Phase diagram of chiral biopolymer Wigner crystals
Gregory M. Grason and Robijn F. Bruinsma
Phys. Rev. E 76, 021924 (2007)
- First-contact time to a patch in a multidimensional potential well
Le Yang, David Sept, and A. E. Carlsson
Phys. Rev. E 76, 021911 (2007)
- Free energy and extension of a semiflexible polymer in cylindrical confining geometries
Yingzi Yang, Theodore W. Burkhardt, and Gerhard Gompper
Phys. Rev. E 76, 011804 (2007)
- Conformations of confined biopolymers
Frederik Wagner, Gianluca Lattanzi, and Erwin Frey
Phys. Rev. E 75, 050902 (2007)
- Stretching short biopolymers by fields and forces
Yuko Hori, Ashok Prasad, and Jané Kondev
Phys. Rev. E 75, 041904 (2007)
- Screwlike order, macroscopic chirality, and elastic distortions in high-density DNA mesophases
F. Manna, V. Lorman, R. Podgornik, and B. Žekš
Phys. Rev. E 75, 030901 (2007)
- Model for stretching elastic biopolymers which exhibit conformational transformations
R. G. Haverkamp, A. T. Marshall, and M. A. Williams
Phys. Rev. E 75, 021907 (2007)
- Extrinsic size effect in piezoresponse force microscopy of thin films
Anna N. Morozovska, Sergei V. Svechnikov, Eugene A. Eliseev, and Sergei V. Kalinin
Phys. Rev. B 76, 054123 (2007)
- Direct Measurement of Torque in an Optical Trap and Its Application to Double-Strand DNA
László Oroszi, Péter Galajda, Huba Kirei, Sándor Bottka, and Pál Ormos
Phys. Rev. Lett. 97, 058301 (2006)
- Temperature Effects on Threshold Counterion Concentration to Induce Aggregation of fd Virus
Qi Wen and Jay X. Tang
Phys. Rev. Lett. 97, 048101 (2006)
- Transition from Unilamellar to Bilamellar Vesicles Induced by an Amphiphilic Biopolymer
Jae-Ho Lee, Vivek Agarwal, Arijit Bose, Gregory F. Payne, and Srinivasa R. Raghavan
Phys. Rev. Lett. 96, 048102 (2006)
- Conformational transformations induced by the charge-curvature interaction: Mean-field approach
Yu. B. Gaididei, P. L. Christiansen, and W. J. Zakrzewski
Phys. Rev. E 74, 021914 (2006)
- Microrheological characterization of anisotropic materials
I. A. Hasnain and A. M. Donald
Phys. Rev. E 73, 031901 (2006)
- Spicules and the Effect of Rigid Rods on Enclosing Membrane Tubes
D. R. Daniels and M. S. Turner
Phys. Rev. Lett. 95, 238101 (2005)
- Statics and Dynamics of Single DNA Molecules Confined in Nanochannels
Walter Reisner, Keith J. Morton, Robert Riehn, Yan Mei Wang, Zhaoning Yu, Michael Rosen, James C. Sturm, Stephen Y. Chou, Erwin Frey, and Robert H. Austin
Phys. Rev. Lett. 94, 196101 (2005)
- Nonlinear elasticity of single collapsed polyelectrolytes
Hirofumi Wada, Yoshihiro Murayama, and Masaki Sano
Phys. Rev. E 72, 041803 (2005)
- General equilibrium shape equations of polymer chains
Shengli Zhang, Xianjun Zuo, Minggang Xia, Shumin Zhao, and Erhu Zhang
Phys. Rev. E 70, 051902 (2004)
- Spatially resolved electronic detection of biopolymers
F. Pouthas, C. Gentil, D. Côte, G. Zeck, B. Straub, and U. Bockelmann
Phys. Rev. E 70, 031906 (2004)
- Pattern formation driven by nematic ordering of assembling biopolymers
Falko Ziebert and Walter Zimmermann
Phys. Rev. E 70, 022902 (2004)
- Microrheology of solutions of semiflexible biopolymer filaments using laser tweezers interferometry
Karim M. Addas, Christoph F. Schmidt, and Jay X. Tang
Phys. Rev. E 70, 021503 (2004)
- Large phenotype jumps in biomolecular evolution
F. Bardou and L. Jaeger
Phys. Rev. E 69, 031908 (2004)
- Processive Motor Protein as an Overdamped Brownian Stepper
Martin Bier
Phys. Rev. Lett. 91, 148104 (2003)
- Counterion Distribution around DNA Probed by Solution X-Ray Scattering
R. Das, T. T. Mills, L. W. Kwok, G. S. Maskel, I. S. Millett, S. Doniach, K. D. Finkelstein, D. Herschlag, and L. Pollack
Phys. Rev. Lett. 90, 188103 (2003)
- Nonequilibrium Unfolding of Polyelectrolyte Condensates in Electric Fields
R. R. Netz
Phys. Rev. Lett. 90, 128104 (2003)
- Molecular Elasticity and the Geometric Phase
Joseph Samuel and Supurna Sinha
Phys. Rev. Lett. 90, 098305 (2003)
- Network rigidity at finite temperature: Relationships between thermodynamic stability, the nonadditivity of entropy, and cooperativity in molecular systems
Donald J. Jacobs, S. Dallakyan, G. G. Wood, and A. Heckathorne
Phys. Rev. E 68, 061109 (2003)
- Statistical mechanics of triangulated ribbons
Boris Mergell, Mohammad R. Ejtehadi, and Ralf Everaers
Phys. Rev. E 66, 011903 (2002)
- Morphological ordering in biopolymers : Informational statistical thermodynamic approach
Sergio A. Hassan, Marcus V. Mesquita, Aurea R. Vasconcellos, and Roberto Luzzi
Phys. Rev. E 65, 041914 (2002)
- Statistical mechanics of secondary structures formed by random RNA sequences
R. Bundschuh and T. Hwa
Phys. Rev. E 65, 031903 (2002)
- Raft Instability of Biopolymer Gels
Itamar Borukhov and Robijn F. Bruinsma
Phys. Rev. Lett. 87, 158101 (2001)
- Effects of random potential on transport
Y. Jia, S. N. Yu, and J. R. Li
Phys. Rev. E 63, 052101 (2001)
- Enhanced Diffusion in Active Intracellular Transport
Avi Caspi, Rony Granek, and Michael Elbaum
Phys. Rev. Lett. 85, 5655 (2000)
- Microrheology of Biopolymer -Membrane Complexes
E. Helfer, S. Harlepp, L. Bourdieu, J. Robert, F. C. MacKintosh, and D. Chatenay
Phys. Rev. Lett. 85, 457 (2000)
- Role of Secondary Motifs in Fast Folding Polymers: A Dynamical Variational Principle
Amos Maritan, Cristian Micheletti, and Jayanth R. Banavar
Phys. Rev. Lett. 84, 3009 (2000)
- Force-velocity relation for growing biopolymers
A. E. Carlsson
Phys. Rev. E 62, 7082 (2000)
- Elastic property of single double-stranded DNA molecules: Theoretical study and comparison with experiments
Haijun Zhou, Yang Zhang, and Zhong-can Ou-Yang
Phys. Rev. E 62, 1045 (2000)
- Steric interaction of an incoming particle with grafted rods: Exact solutions and unusual force profiles
I. C. Miller and D. R. Williams
Phys. Rev. E 61, R4706 (2000)
- Microrheometry underestimates the values of the viscoelastic moduli in measurements on F-actin solutions compared to macrorheometry
Frank G. Schmidt, Bernhard Hinner, and Erich Sackmann
Phys. Rev. E 61, 5646 (2000)
- First Order Phase Transition and Evidence for Frustrations in Polyampholytic Gels
Yukikazu Takeoka, A. Nihat Berker, Rose Du, Takashi Enoki, Alexander Grosberg, Mehran Kardar, Taro Oya, Kazunori Tanaka, Guoqiang Wang, Xiaohong Yu, and Toyoichi Tanaka
Phys. Rev. Lett. 82, 4863 (1999)
- Energy-level statistics in the fine conformational resolution of RNA folding dynamics
Ariel Fernández, Teresita Burastero, Rodolfo Salthú, and Ana Tablar
Phys. Rev. E 60, 5888 (1999)
- Helical single-lamellar crystals thermotropically formed in a synthetic nonracemic chiral main-chain polyester
Christopher Y. Li, Donghang Yan, Stephen Z. Cheng, Feng Bai, Jason J. Ge, Bret H. Calhoun, Tianbai He, Liang-Chy Chien, Frank W. Harris, and Bernard Lotz
Phys. Rev. B 60, 12675 (1999)
- Elastically Coupled Two-Level Systems as a Model for Biopolymer Extensibility
Matthias Rief, Julio M. Fernandez, and Hermann E. Gaub
Phys. Rev. Lett. 81, 4764 (1998)
- Flexive and Propulsive Dynamics of Elastica at Low Reynolds Number
Chris H. Wiggins and Raymond E. Goldstein
Phys. Rev. Lett. 80, 3879 (1998)
- Dynamic shear modulus of a semiflexible polymer network
F. Gittes and F. C. MacKintosh
Phys. Rev. E 58, R1241 (1998)
- Microscopic Viscoelasticity: Shear Moduli of Soft Materials Determined from Thermal Fluctuations
F. Gittes, B. Schnurr, P. D. Olmsted, F. C. MacKintosh, and C. F. Schmidt
Phys. Rev. Lett. 79, 3286 (1997)
- Microtubule dynamics. II. Kinetics of self-assembly
Henrik Flyvbjerg and Elmar Jobs
Phys. Rev. E 56, 7083 (1997)
- Elasticity of Semiflexible Biopolymer Networks
F. C. MacKintosh, J. Käs, and P. A. Janmey
Phys. Rev. Lett. 75, 4425 (1995)
- Folding RNA with the minimal loss of entropy
Ariel Fernández, Hugo Arias, and Diego Guerín
Phys. Rev. E 52, R1299 (1995)
- Multifractal analysis of solvent accessibilities in proteins
James S. Balafas and T. Gregory Dewey
Phys. Rev. E 52, 880 (1995)
- Observation of enhancement of stopping power and possible hydrodynamic shock behavior in penetration of large molecules in solids
Young K. Bae, Yung Y. Chu, and Lewis Friedman
Phys. Rev. A 51, R1742 (1995)
- Fluctuation driven ratchets: Molecular motors
R. Dean Astumian and Martin Bier
Phys. Rev. Lett. 72, 1766 (1994)
- Near-neighbor effects in cooperative modified self-consistent phonon approximation melting in DNA
Y. Z. Chen and E. W. Prohofsky
Phys. Rev. E 49, 873 (1994)
- Amplification of coherent polar vibrations in biopolymers : Fröhlich condensate
Marcus V. Mesquita, Aurea R. Vasconcellos, and Roberto Luzzi
Phys. Rev. E 48, 4049 (1993)
- Theoretical study of the effect of salt and the role of strained hydrogen bonds on the thermal stability of DNA polymers
Y. Z. Chen and E. W. Prohofsky
Phys. Rev. E 48, 3099 (1993)
- Role of counterions in the gigahertz relaxation of wet DNA
Glenn Edwards, Guangtao Ying, and Jerri Tribble
Phys. Rev. A 45, R8344 (1992)
- Crosslinked biopolymers : Experimental evidence for scalar percolation theory
M. A. Axelos and M. Kolb
Phys. Rev. Lett. 64, 1457 (1990)
- Spectral shapes of Mössbauer absorption and incoherent neutron scattering from harmonically bound nuclei in Brownian motion: Applications to macromolecular systems
I. Nowik, E. R. Bauminger, S. G. Cohen, and S. Ofer
Phys. Rev. A 31, 2291 (1985)